PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5921_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 236aa    MW: 26682.6 Da    PI: 6.3133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5921_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-09131179455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR +iN+++  L++++P +   ++  +  a++L + ++Y++sLq
  RrC5921_p1 131 SHSLAERVRRGKINERLKCLQDIVPGC---YKVAMGMATMLDEIINYVQSLQ 179
                 8**************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-16125196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-9125183No hitNo description
Gene3DG3DSA:4.10.280.101.3E-15127190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.034127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-7131179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDDPITQLAE LSNTLHQFQT MFASPFSSSL DSLFFHHQQN QQLPDHFPGK SLEDISFQQE  60
TFLPSKIHDS DESSSRNDTK KRKTLTSSVS TSENSGTKNS YARKGRSKSR EEEKEREDVH  120
VRVKRGQATD SHSLAERVRR GKINERLKCL QDIVPGCYKV AMGMATMLDE IINYVQSLQN  180
QVEFLSMELT AASSYYDFNS EADAVDSMQK AKAREAVEMG QGRDGSSVFH PSSWTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885851e-154AF488585.1 Arabidopsis thaliana clone bHLH050 putative bHLH transcription factor mRNA, partial sequence.
GenBankAK1187811e-154AK118781.1 Arabidopsis thaliana At1g73830 mRNA for putative bHLH transcription factor (bHLH050), complete cds, clone: RAFL21-11-M10.
GenBankBT0060551e-154BT006055.1 Arabidopsis thaliana clone U51368 putative helix-loop-helix DNA-binding protein (At1g73830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674822.11e-136PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK71e-121BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A078C8B71e-133A0A078C8B7_BRANA; BnaC06g34680D protein
STRINGBra015960.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-101BR enhanced expression 3